SpliceGrapher

SpliceGrapher is a package for creating splice graphs from RNA-Seq data, guided by gene models and EST data (when available).

Features

• Use your favorite read mapping and spliced alignment tools.
• Accurate spliced-alignment filtering using SVM classifiers that recognize splice junction sequence features.
• Generate statistics of alternative splicing.
• Visualization of splice graphs, splice junctions, and read depth
• Use our pipeline or construct your own custom pipeline out of SpliceGrapher modules.

Splice graph for a gene in the plant A. thaliana